Browsing by Author Korolev, Nikolay


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Issue DateTitleAuthor(s)
2013An advanced coarse-grained nucleosome core particle model for computer simulations of nucleosome-nucleosome interactions under varying ionic conditionsFan, Yanping; Korolev, Nikolay; Nordenskiöld, Lars; Lyubartsev, Alexander P.
 2011Biophysical properties and supramolecular structure of self-assembled liposome/ε-peptide/DNA nanoparticles : correlation with gene deliveryYan, Jiang; Korolev, Nikolay; Eom, Khee Dong; Nordenskiöld, Lars; Tam, James P.
2021Bottom-up coarse-grained modeling of DNASun, Tiedong; Minhas, Vishal; Korolev, Nikolay; Mirzoev, Alexander; Lyubartsev, Alexander P.; Nordenskiöld, Lars
2015Chromatin compaction under mixed salt conditions : opposite effects of sodium and potassium ions on nucleosome array foldingAllahverdi, Abdollah; Chen, Qinming; Korolev, Nikolay; Nordenskiöld, Lars
2014A coarse-grained DNA model parameterized from atomistic simulations by inverse Monte CarloKorolev, Nikolay; Luo, Di; Lyubartsev, Alexander P.; Nordenskiöld, Lars
2018The effect of linker DNA on the structure and interaction of nucleosome core particlesHuang, Yen-Chih; Su, Chun-Jen; Korolev, Nikolay; Berezhnoy, Nikolay V.; Wang, Sai; Soman, Aghil; Chen, Chun-Yu; Chen, Hsin-Lung; Jeng, U-Ser; Nordenskiöld, Lars
 2011The effect of salt on oligocation-induced chromatin condensationKorolev, Nikolay; Zhao, Yongqian; Allahverdi, Abdollah; Eom, Khee Dong; Nordenskiöld, Lars; Tam, James P.
2020The human telomeric nucleosome displays distinct structural and dynamic propertiesSoman, Aghil; Liew, Chong Wai; Teo, Hsiang Ling; Berezhnoy, Nikolay V.; Olieric, Vincent; Korolev, Nikolay; Rhodes, Daniela; Nordenskiöld, Lars
2011Influence of histone tails and H4 tail acetylations on nucleosome–nucleosome interactionsLiu, Ying; Lu, Chenning; Yang, Ye; Fan, Yanping; Yang, Renliang; Liu, Chuan Fa; Korolev, Nikolay; Nordenskiöld, Lars
2016The Influence of Ionic Environment and Histone Tails on Ordered Columnar Phases of Nucleosome Core ParticlesBerezhnoy, Nikolay V.; Liu, Ying; Allahverdi, Abdollah; Yang, Renliang; Su, Chun-Jen; Liu, Chuan-Fa; Korolev, Nikolay; Nordenskiöld, Lars
2021Linker histone defines structure and self-association behaviour of the 177 bp human chromatosomeWang, Sai; Vogirala, Vinod Kumar; Soman, Aghil; Berezhnoy, Nikolay V.; Liu, Barry Zhehui; Wong, Andrew See Weng; Korolev, Nikolay; Su, Chun-Jen; Sandin, Sara; Nordenskiöld, Lars
2020Modeling DNA flexibility : comparison of force fields from atomistic to multiscale levelsMinhas, Vishal; Sun, Tiedong; Mirzoev, Alexander; Korolev, Nikolay; Lyubartsev, Alexander P.; Nordenskiöld, Lars
 2012Modelling chromatin structure and dynamics : status and prospectsKorolev, Nikolay; Fan, Yanping; Nordenskiöld, Lars; Lyubartsev, Alexander P.
 2014Molecular dynamics simulations demonstrate the regulation of DNA-DNA attraction by H4 histone tail acetylations and mutationsKorolev, Nikolay; Yu, Hang; Lyubartsev, Alexander P.; Nordenskiöld, Lars
2019A multiscale analysis of DNA phase separation : from atomistic to mesoscale levelSun, Tiedong; Mirzoev, Alexander; Lyubartsev, Alexander P.; Minhas, Vishal; Korolev, Nikolay; Nordenskiöld, Lars
2015Multiscale modelling of nucleosome core particle aggregationFan, Yanping; Nordenskiöld, Lars; Lyubartsev, Alexander P; Korolev, Nikolay
 2012The polyelectrolyte properties of chromatinNordenskiöld, Lars; Korolev, Nikolay; Allahverdi, Abdollah; Lyubartsev, Alexander P.
 2013Principles of electrostatic interactions and self-assembly in lipid/peptide/DNA systems: Applications to gene deliveryBerezhnoy, Nikolay V.; Korolev, Nikolay; Nordenskiöld, Lars
2017Single-molecule compaction of megabase-long chromatin molecules by multivalent cationsZinchenko, Anatoly; Berezhnoy, Nikolay V.; Wang, Sal; Rosencrans, William M.; Korolev, Nikolay; van der Maarel, Johan R. C.; Nordenskiöld, Lars
 2012Structure and internal organization of overcharged cationic-lipid/peptide/DNA self-assembly complexesYan, Jiang; Korolev, Nikolay; Su, Chun-Jen; Nordenskiöld, Lars; Berezhnoy, Nikolay V.