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| Issue Date | Title | Author(s) |
 | 2019 | Analysis of an improved Cyanophora paradoxa genome assembly | Price, Dana C.; Goodenough, Ursula W.; Roth, Robyn; Lee, Jae-Hyeok; Kariyawasam, Thamali; Mutwil, Marek; Ferrari, Camilla; Facchinelli, Fabio; Ball, Steven G.; Cenci, Ugo; Chan, Cheong Xin; Wagner, Nicole E.; Yoon, Hwan Su; Weber, Andreas P. M.; Bhattacharya, Debashish |
| 2019 | Appropriate thiamin pyrophosphate levels are required for acclimation to changes in photoperiod | Rosado-Souza, Laise; Proost, Sebastian; Moulin, Michael; Bergmann, Susan; Bocobza, Samuel E.; Aharoni, Asaph; Fitzpatrick, Teresa B.; Mutwil, Marek; Fernie, Alisdair R.; Obata, Toshihiro |
| | 2018 | AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome | Janowski, Marcin; Zoschke, Reimo; Scharff, Lars B.; Jaime, Silvia Martinez; Ferrari, Camilla; Proost, Sebastian; Ng, Jonathan Wei Xiong; Omranian, Nooshin; Musialak-Lange, Magdalena; Nikoloski, Zoran; Graf, Alexander; Schöttler, Mark A; Sampathkumar, Arun; Vaid, Neha; Mutwil, Marek |
| 2019 | The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation | Rendón-Anaya, Martha; Ibarra-Laclette, Enrique; Méndez-Bravo, Alfonso; Lan, Tianying; Zheng, Chunfang; Carretero-Paulet, Lorenzo; Perez-Torres, Claudia Anahí; Chacón-López, Alejandra; Hernandez-Guzmán, Gustavo; Chang, Tien-Hao; Farr, Kimberly M; Barbazuk, W Brad; Chamala, Srikar; Mutwil, Marek; Shivhare, Devendra; Alvarez-Ponce, David; Mitter, Neena; Hayward, Alice; Fletcher, Stephen; Rozas, Julio; Sánchez Gracia, Alejandro; Kuhn, David; Barrientos-Priego, Alejandro F; Salojärvi, Jarkko; Librado, Pablo; Sankoff, David; Herrera-Estrella, Alfredo; Albert, Victor A; Herrera-Estrella, Luis |
| 2022 | Bacteria.guru: comparative transcriptomics and co-expression database for bacterial pathogens | Lim, Peng Ken; Davey, Emilia Emmanuelle; Wee, Sean; Seetoh, Wei Song; Goh, Jong Ching; Zheng, Xinghai; Phang, Sean Kia Ann; Seah, Eugene Sheng Kai; Ng, Janice Wan Zhen; Wee, Xavier Jia Hui; Quek, Aloysius Jun Hui; Lim, Jordan JingHeng; Rodrigues, Edbert Edric; Lee, Heesoo; Lim, Chin Yong; Tan, Wei Zhi; Dan, Yuet Ruh; Lee, Bronson; Chee, Samuel En Le; Lim, Zachary Ze En; Guan, Jia Sheng; Tan, Ivan Jia Le; Arong, Trinidad Jeremiah; Mutwil, Marek |
| | 2019 | Cellulose synthesis - central components and their evolutionary relationships | Lampugnani, Edwin R.; Flores-Sandoval, Eduardo; Tan, Qiao Wen; Mutwil, Marek; Bowman, John L.; Persson, Staffan |
| 2021 | Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants | Julca, Irene; Ferrari, Camilla; Flores-Tornero, María; Proost, Sebastian; Lindner, Ann-Cathrin; Hackenberg, Dieter; Steinbachová, Lenka; Michaelidis, Christos; Gomes Pereira, Sónia; Misra, Chandra Shekhar; Kawashima, Tomokazu; Borg, Michael; Berger, Frédéric; Goldberg, Jacob; Johnson, Mark; Honys, David; Twell, David; Sprunck, Stefanie; Dresselhaus, Thomas; Becker, Jörg D.; Mutwil, Marek |
| 2018 | CoNekT : an open-source framework for comparative genomic and transcriptomic network analyses | Proost, Sebastian; Mutwil, Marek |
| 2023 | Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses | Tan, Qiao Wen; Lim, Peng Ken; Chen, Zhong; Pasha, Asher; Provart, Nicholas; Arend, Marius; Nikoloski, Zoran; Mutwil, Marek |
| 2020 | Diurnal.plant.tools : comparative transcriptomic and co-expression analyses of diurnal gene expression of the Archaeplastida kingdom | Ng, Jonathan Wei Xiong; Tan, Qiao Wen; Ferrari, Camilla; Mutwil, Marek |
| 2018 | Ensemble gene function prediction database reveals genes important for complex I formation in
Arabidopsis thaliana | Hansen, Bjoern Oest; Meyer, Etienne H.; Ferrari, Camilla; Vaid, Neha; Movahedi, Sara; Vandepoele, Klaas; Nikoloski, Zoran; Mutwil, Marek |
| 2022 | Exploiting plant transcriptomic databases: resources, tools, and approaches | Lim, Peng Ken; Zheng, Xinghai; Goh, Jong Ching; Mutwil, Marek |
| 2022 | Feature importance network reveals novel functional relationships between biological features in Arabidopsis thaliana | Ng, Jonathan Wei Xiong; Chua, Swee Kwang; Mutwil, Marek |
| 2020 | Fungi.guru : comparative genomic and transcriptomic resource for the fungi kingdom | Lim, Jolyn Jia Jia; Koh, Jace; Moo, Jia Rong; Villanueva, Erielle Marie Fajardo; Putri, Dhira Anindya; Lim, Yuen Shan; Seetoh, Wei Song; Mulupuri, Sriya; Ng, Janice Wan Zhen; Nguyen, Nhi Le Uyen; Reji, Rinta; Foo, Herman; Zhao, Margaret Xuan; Chan, Tong Ling; Rodrigues, Edbert Edric; Kairon, Ryanjit Singh; Hee, Ker Min; Chee, Natasha Cassandra; Low, Ann Don; Chen, Zoe Hui Xin; Lim, Shan Chun; Lunardi, Vanessa; Fong, Tuck Choy; Chua, Cherlyn Xin'Er; Koh, Kenny Ting Sween; Julca, Irene; Delli-Ponti, Riccardo; Ng, Jonathan Wei Xiong; Mutwil, Marek |
| 2023 | Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites | Julca, Irene; Mutwil-Anderwald, Daniela; Manoj, Vaishnervi; Khan, Zahra; Lai, Soak Kuan; Yang, Lay K.; Beh, Ing Tsyr; Dziekan, Jerzy; Lim, Yoon P.; Lim, Shen Kiat; Low, Yee W.; Lam, Yuen In; Tjia, Seth; Mu, Yuguang; Tan, Qiao Wen; Nuc, Przemyslaw; Choo, Le M.; Khew, Gillian; Shining, Loo; Kam, Antony; Tam, James P.; Bozdech, Zbynek; Schmidt, Maximilian; Usadel, Bjoern; Kanagasundaram, Yoganathan; Alseekh, Saleh; Fernie, Alisdair; Li, Hoi Y.; Mutwil, Marek |
| 2019 | Inferring biosynthetic and gene regulatory networks from Artemisia annua RNA sequencing data on a credit card-sized ARM computer | Tan, Qiao Wen; Mutwil, Marek |
| 2019 | Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida | Ferrari, Camilla; Proost, Sebastian; Janowski, Marcin; Becker, Jörg; Nikoloski, Zoran; Bhattacharya, Debashish; Price, Dana; Tohge, Takayuki; Bar-Even, Arren; Fernie, Alisdair; Stitt, Mark; Mutwil, Marek |
| 2020 | LSTrAP-Cloud : a user-friendly cloud computing pipeline to infer coexpression networks | Tan, Qiao Wen; Goh, William; Mutwil, Marek |
| 2020 | LSTrAP-Crowd : prediction of novel components of bacterial ribosomes with crowd-sourced analysis of RNA sequencing data | Hew, Benedict; Tan, Qiao Wen; Goh, William; Ng, Jonathan Wei Xiong; Mutwil, Marek |
| 2020 | Malaria.tools - comparative genomic and transcriptomic database for Plasmodium species | Tan, Qiao Wen; Mutwil, Marek |
