| Issue Date | Title | Author(s) |
 | 2017 | Cat-D: a targeted sequencing method for the simultaneous detection of small DNA mutations and large DNA deletions with flexible boundaries | Hong, Ru; Chandola, Udita; Zhang, Li-Feng |
| 2020 | Defining essential enhancers for pluripotent stem cells using a features-oriented CRISPR-Cas9 screen | Wang, Hao Fei; Warrier, Tushar; Farran, Chadi A.; Zheng, Zi Hao; Xing, Qiao Rui; Fullwood, Melissa Jane; Zhang, Li-Feng; Li, Hu; Xu, Jian; Lim, Tit-Meng; Loh, Yuin-Han |
| 2020 | Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing | Xing, Qiao Rui; El Farran, C. A.; Gautam, P.; Chuah, Y. S.; Warrier, T.; Toh, C. X. D.; Kang, N. Y.; Sugii, S.; Chang, Y. T.; Xu, J.; Collins, J. J.; Daley, G. Q.; Li, H.; Zhang, Li-Feng; Loh, Y. H. |
| 2018 | Genome-wide RNAi screen identify melanoma-associated antigen Mageb3 involved in X chromosome inactivation | Li, Wei; Hong, Ru; Lai, Lan-Tian; Dong, Qiman; Ni, Peiling; Chelliah, Rosi; Huq, Mehnaz; Siti Nadirah Ismail; Chandola, Udita; Ang, Zhiwei; Lin, Bingqing; Chen, Xin; Chen, Lingyi; Zhang, Li-Feng |
| 2018 | Global H3.3 dynamic deposition defines its bimodal role in cell fate transition | Fang, Hai-Tong; EL Farran, Chadi A.; Xing, Qiao Rui; Zhang, Li-Feng; Li, Hu; Lim, Bing; Loh, Yuin-Han |
| 2017 | High-resolution RNA allelotyping along the inactive X chromosome: evidence of RNA polymerase III in regulating chromatin configuration | Hong, Ru; Lin, Bingqing; Lu, Xinyi; Lai, Lan-Tian; Chen, Xin; Sanyal, Amartya; Ng, Huck-Hui; Zhang, Kun; Zhang, Li-Feng |
| 2013 | Immunofluorescence protects RNA signals in simultaneous RNA–DNA FISH | Lai, Lan-Tian; Lee, Pin Jie; Zhang, Li-Feng |
| 2014 | LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data | Lin, Bingqing; Zhang, Li-Feng; Chen, Xin |
| 2018 | Live-cell imaging and functional dissection of Xist RNA reveal mechanisms of X chromosome inactivation and reactivation | Ha, Norbert How Ong; Lai, Lan-Tian; Chelliah, Rosi; Zhen, Yashu; Seet, Vanessa Pei Yi; Lai, Soak-Kuan; Li, Hoi-Yeung; Ludwig, Alexander; Sandin, Sara; Chen, Lingyi; Zhang, Li-Feng |
| 2021 | The lupus autoantigen La/Ssb is an Xist-binding protein involved in Xist folding and cloud formation | Ha, Norbert; Ding, Nan; Hong, Ru; Liu, Rubing; Roca, Xavier; Luo, Yingyuan; Duan, Xiaowei; Wang, Xiao; Ni, Peiling; Wu, Haiyang; Zhang, Li-Feng; Chen, Lingyi |
| 2020 | Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility | Xing, Qiao Rui; Farran, Chadi A. El; Zeng, Yingying; Yi, Yao; Warrier, Tushar; Gautam, Pradeep; Collins, James J.; Xu, Jian; Dröge, Peter; Koh, Cheng-Gee; Li, Hu; Zhang, Li-Feng; Loh, Yuin-Han |
| 2014 | Using amino-labeled nucleotide probes for simultaneous single molecule RNA-DNA FISH | Basu, Reelina; Lai, Lan-Tian; Meng, Zhenyu; Wu, Jun; Shao, Fangwei; Zhang, Li-Feng |
