Please use this identifier to cite or link to this item: https://hdl.handle.net/10356/97295
Title: Identifying DNA motifs based on match and mismatch alignment information
Authors: Shu, Jian Jun
Yong, Kian Yan
Issue Date: 2013
Source: Shu, J. J., & Yong, K. Y. (2013). Identifying DNA motifs based on match and mismatch alignment information. Journal of Mathematical Chemistry, 51(7), 1720-1728.
Series/Report no.: Journal of mathematical chemistry
Abstract: The conventional way of identifying DNA motifs, solely based on match alignment information, is susceptible to a high number of spurious sites. A novel scoring system has been introduced by taking both match and mismatch alignment information into account. The mismatch alignment information is useful to remove spurious sites encountered in DNA motif searching. As an example, a correct TATA box site in Homo sapiensH4/g gene has successfully been identified based on match and mismatch alignment information.
URI: https://hdl.handle.net/10356/97295
http://hdl.handle.net/10220/13243
ISSN: 0259-9791
DOI: http://dx.doi.org/10.1007/s10910-013-0175-2
Rights: © 2013 Springer Science+Business Media New York. This is the author created version of a work that has been peer reviewed and accepted for publication by Journal of Mathematical Chemistry, Springer Science+Business Media New York. It incorporates referee’s comments but changes resulting from the publishing process, such as copyediting, structural formatting, may not be reflected in this document. The published version is available at: [http://dx.doi.org/10.1007/s10910-013-0175-2].
Fulltext Permission: open
Fulltext Availability: With Fulltext
Appears in Collections:MAE Journal Articles

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