Please use this identifier to cite or link to this item: https://hdl.handle.net/10356/155129
Full metadata record
DC FieldValueLanguage
dc.contributor.authorSee, Yi Xiangen_US
dc.contributor.authorChen, Kaijingen_US
dc.contributor.authorFullwood, Melissa Janeen_US
dc.date.accessioned2022-02-07T05:29:30Z-
dc.date.available2022-02-07T05:29:30Z-
dc.date.issued2022-
dc.identifier.citationSee, Y. X., Chen, K. & Fullwood, M. J. (2022). MYC overexpression leads to increased chromatin interactions at superenhancers and MYC binding sites. Genome Research. https://dx.doi.org/10.1101/gr.276313.121en_US
dc.identifier.issn1088-9051en_US
dc.identifier.urihttps://hdl.handle.net/10356/155129-
dc.description.abstractThe MYC oncogene encodes for the MYC protein and is frequently dysregulated across multiple cancer cell types, making it an attractive target for cancer therapy. MYC overexpression leads to MYC binding at active enhancers, resulting in a global transcriptional amplification of active genes. Since superenhancers are frequently dysregulated in cancer, we hypothesized that MYC preferentially invades into superenhancers and alters the cancer genome organization. To that end, we performed ChIP-seq, RNA-seq, 4C-seq and SIQHiC (Spike-in Quantitative Hi-C) on the U2OS osteosarcoma cell line with tetracycline-inducible MYC. MYC overexpression in U2OS cells modulated histone acetylation and increased MYC binding at superenhancers. SIQHiC analysis revealed increased global chromatin contact frequency, particularly at chromatin interactions connecting MYC binding sites at promoters and enhancers. Immunofluorescence staining showed that MYC molecules formed punctate foci at these transcriptionally active domains after MYC overexpression. These results demonstrate the accumulation of overexpressed MYC at promoter-enhancer hubs and suggest that MYC invades into enhancers through spatial proximity. At the same time, the increased protein-protein interactions may strengthen these chromatin interactions to increase chromatin contact frequency. CTCF siRNA knockdown in MYC overexpressed U2OS cells demonstrated that removal of architectural proteins can disperse MYC and abrogate the increase in chromatin contacts. By elucidating the chromatin landscape of MYC driven cancers, we can potentially target MYC associated chromatin interactions for cancer therapy.en_US
dc.description.sponsorshipMinistry of Education (MOE)en_US
dc.language.isoenen_US
dc.relationMOE2014-T3-1-006en_US
dc.relationMOET2EP30120-0009en_US
dc.relation.ispartofGenome Researchen_US
dc.rightsThis manuscript is Open Access. This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International license), as described at http://creativecommons.org/licenses/by-nc/4.0/.en_US
dc.subjectScience::Biological sciences::Geneticsen_US
dc.subjectScience::Biological sciences::Molecular biologyen_US
dc.titleMYC overexpression leads to increased chromatin interactions at superenhancers and MYC binding sitesen_US
dc.typeJournal Articleen
dc.contributor.schoolSchool of Biological Sciencesen_US
dc.contributor.organizationCancer Science Institute of Singapore, National University of Singaporeen_US
dc.contributor.organizationYong Loo Lin School of Medicine, National University of Singaporeen_US
dc.contributor.organizationInstitute of Molecular and Cell Biology, A*STARen_US
dc.identifier.doi10.1101/gr.276313.121-
dc.description.versionAccepted versionen_US
dc.subject.keywordsChromatin Interactionsen_US
dc.subject.keywordsCanceren_US
dc.description.acknowledgementThis research is supported by the RNA Biology Center at the Cancer Science Institute of Singapore, NUS, as part of funding under the Singapore Ministry of Education Academic Research Fund Tier 3 grant awarded to Daniel Tenen (MOE2014-T3-1-006). This research is supported by the NRF Singapore and the Singapore Ministry of Education under its Research Centres of Excellence initiative and a Singapore Ministry of Education Academic Research Fund Tier 2 grant awarded to M.J.F. (MOET2EP30120-0009).en_US
item.fulltextWith Fulltext-
item.grantfulltextopen-
Appears in Collections:SBS Journal Articles
Files in This Item:
File Description SizeFormat 
Genome Res.-2022-See-gr.276313.121.pdfMain1 MBAdobe PDFView/Open
Supplemental_Materials.pdfSupplemental Materials4.17 MBAdobe PDFView/Open

Page view(s)

39
Updated on Jul 3, 2022

Download(s)

16
Updated on Jul 3, 2022

Google ScholarTM

Check

Altmetric


Plumx

Items in DR-NTU are protected by copyright, with all rights reserved, unless otherwise indicated.