Please use this identifier to cite or link to this item:
|Title:||Scientific visualization of DNA sequence matching in large-scale genomics sequencing||Authors:||Raina, Priyanka||Keywords:||DRNTU::Engineering::Computer science and engineering::Information systems::Information interfaces and presentation||Issue Date:||2013||Abstract:||OligoSpawn is a Linux-based software package for DNA pattern discovery. OligoSpawn can be used to discover two types of oligos (short DNA patterns of 20-50 bases long), namely unique and popular oligos, from large databases of gene sequences. The purpose of this project is to add a GUI for OligoSpawn, and then extend the OligoSpawn GUI to visualize the mapping of large numbers of short DNA reads from next-generation sequencing (NGS) to reference genomes. The GUI is being constructed in Python using PyPE as the IDE, wxpython as the GUI-building toolkit and Swig to wrap around the C and C++ based backend code. The report is segmented into three major sections: Overview of the software and concepts utilized; Techniques employed during implementation and the Final results.||URI:||http://hdl.handle.net/10356/51992||Rights:||Nanyang Technological University||Fulltext Permission:||restricted||Fulltext Availability:||With Fulltext|
|Appears in Collections:||SCSE Student Reports (FYP/IA/PA/PI)|
Items in DR-NTU are protected by copyright, with all rights reserved, unless otherwise indicated.