Please use this identifier to cite or link to this item: https://hdl.handle.net/10356/51992
Title: Scientific visualization of DNA sequence matching in large-scale genomics sequencing
Authors: Raina, Priyanka
Keywords: DRNTU::Engineering::Computer science and engineering::Information systems::Information interfaces and presentation
Issue Date: 2013
Abstract: OligoSpawn is a Linux-based software package for DNA pattern discovery. OligoSpawn can be used to discover two types of oligos (short DNA patterns of 20-50 bases long), namely unique and popular oligos, from large databases of gene sequences. The purpose of this project is to add a GUI for OligoSpawn, and then extend the OligoSpawn GUI to visualize the mapping of large numbers of short DNA reads from next-generation sequencing (NGS) to reference genomes. The GUI is being constructed in Python using PyPE as the IDE, wxpython as the GUI-building toolkit and Swig to wrap around the C and C++ based backend code. The report is segmented into three major sections: Overview of the software and concepts utilized; Techniques employed during implementation and the Final results.
URI: http://hdl.handle.net/10356/51992
Rights: Nanyang Technological University
Fulltext Permission: restricted
Fulltext Availability: With Fulltext
Appears in Collections:SCSE Student Reports (FYP/IA/PA/PI)

Files in This Item:
File Description SizeFormat 
SCE12-0402.pdf
  Restricted Access
Final Report2.57 MBAdobe PDFView/Open

Google ScholarTM

Check

Items in DR-NTU are protected by copyright, with all rights reserved, unless otherwise indicated.