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DC Field | Value | Language |
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dc.contributor.author | Venkatraman, Lakshmi | |
dc.date.accessioned | 2014-05-28T07:34:37Z | |
dc.date.available | 2014-05-28T07:34:37Z | |
dc.date.copyright | 2011 | en_US |
dc.date.issued | 2011 | |
dc.identifier.uri | http://hdl.handle.net/10356/60570 | |
dc.description.abstract | Transforming growth factor-β1 (TGF-β1) plays important roles in diverse cellular programs and extracellular activation of TGF-β1 from its latent form is an important stage in its physiological regulation. Plasmin has long been accepted as an activator of TGF-β1, but experimental data using in vivo fibrosis models, indicates that plasmin can negatively regulate TGF-β1 levels. In an effort to understand the role of plasmin in TGF-β1 activation, we first built a computational model of plasmin activation by urokinase. Ordinary differential equations were constructed to model the conversion of precursor plasminogen into active plasmin. Computational simulations and bifurcation analysis predicted a bistable system which was tested using cell-free experiments with recombinant proteins. Our results indicated that ultrasensitive, bistable activation of urokinase-plasmin is possible in the presence of substrate competition. We next built a computational model including both plasmin activation and plasmin mediated TGF-β1 activation. We find in computational modeling that at a systems level, plasmin can cause a cooperative, switch-like decrease in TGF-β1 activation. Model predictions were tested using co-culture models of hepatocytes and hepatic stellate cells treated with plasminogen. Treated cells displayed decreased activation of TGF-β1 with sigmoidal dose-response and hysteresis. This decline was accompanied by degradation of thrombospondin-1, an important physiological activator of TGF-β1 that can be cleaved by plasmin. Antagonistic interplay between plasmin and thrombospondin-1 is an important feature of our model, and is confirmed by our experiments. These results suggest novel mechanisms and hidden pitfalls for addressing TGFβ-related diseases, and provide a new explanation for a puzzling behavior in fibrosis. | en_US |
dc.format.extent | 181 p. | en_US |
dc.language.iso | en | en_US |
dc.subject | DRNTU::Engineering::Computer science and engineering | en_US |
dc.title | Mathematical model of activation of transforming growth factor - β1 with application to liver fibrosis progression | en_US |
dc.type | Thesis | |
dc.contributor.supervisor | Sourav Saha Bhowmick | en_US |
dc.contributor.school | School of Computer Science and Engineering | en_US |
dc.description.degree | Doctor of Philosophy (SCE) | en_US |
dc.contributor.research | Singapore-MIT Alliance Programme | en_US |
item.grantfulltext | restricted | - |
item.fulltext | With Fulltext | - |
Appears in Collections: | SMA Theses |
Files in This Item:
File | Description | Size | Format | |
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Lakshmi2011.pdf Restricted Access | Main Report | 2.05 MB | Adobe PDF | View/Open |
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