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Issue DateTitleAuthor(s)
12022Gut Ruminococcaceae levels at baseline correlate with risk of antibiotic-associated diarrheaGu, Xiaoqiong; Sim, Jean X. Y.; Lee, Wei Lin; Cui, Liang; Chan, Yvonne F. Z.; Chang, Ega Danu; Teh, Yii Ean; Zhang, An-Ni; Armas, Federica; Chandra, Franciscus; Chen, Hongjie; Zhao, Shijie; Lee, Zhanyi; Thompson, Janelle; Ooi, Eng Eong; Low, Jenny G.; Alm, Eric J.; Kalimuddin, Shirin
22016Ecological succession of the microbial communities of an air-conditioning cooling coil in the tropicsAcerbi, Enzo; Chenard, Caroline; Miller, Dana; Gaultier, Nicolas Eugene; Heinle, Cassie Elizabeth; Chang, Victor Wei-Chung; Uchida, Akira; Drautz-Moses, Daniela I.; Schuster, Stephan Christoph; Lauro, Federico M.
3 2022Making waves: wastewater surveillance of SARS-CoV-2 in an endemic futureWu, Fuqing; Lee, Wei Lin; Chen, Hongjie; Gu, Xiaoqiong; Chandra, Franciscus; Armas, Federica; Xiao, Amy; Leifels, Mats; Rhode, Steven F.; Wuertz, Stefan; Thompson, Janelle; Alm, Eric J.
42015Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atollJeffries, Thomas C.; Ostrowski, Martin; Williams, Rohan B.; Xie, Chao; Jensen, Rachelle M.; Grzymski, Joseph J.; Senstius, Svend Jacob; Givskov, Michael; Hoeke, Ron; Philip, Gayle K.; Neches, Russell Y.; Drautz-Moses, Daniela I.; Chénard, Caroline; Paulsen, Ian T.; Lauro, Federico M.
52018Particulate polyphosphate and alkaline phosphatase activity across a latitudinal transect in the tropical Indian OceanMartin, Patrick; Lauro, Federico M.; Sarkar, Amit; Prakash, Satya; Vinayachandran, P. N.; Goodkin, Nathalie Fairbank
62016Global transcriptomic responses of Escherichia coli K-12 to volatile organic compoundsYung, Pui Yi; Grasso, Letizia Lo; Mohidin, Abeed Fatima; Acerbi, Enzo; Hinks, Jamie; Seviour, Thomas; Marsili, Enrico; Lauro, Federico M.
72022Metrics to relate COVID-19 wastewater data to clinical testing dynamicsXiao, Amy; Wu, Fuqing; Bushman, Mary; Zhang, Jianbo; Imakaev, Maxim; Chai, Peter R.; Duvallet, Claire; Endo, Noriko; Erickson, Timothy B.; Armas, Federica; Arnold, Brian; Chen, Hongjie; Chandra, Franciscus; Ghaeli, Newsha; Gu, Xiaoqiong; Hanage, William P.; Lee, Wei Lin; Matus, Mariana; McElroy, Kyle A.; Moniz, Katya; Rhode, Steven F.; Thompson, Janelle; Alm, Eric J.
82014Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic historyKim, Hie Lim; Ratan, Aakrosh; Perry, George H.; Montenegro, Alvaro; Miller, Webb; Schuster, Stephan C.
92021Quantitative SARS-CoV-2 alpha variant B.1.1.7 tracking in wastewater by allele-specific RT-qPCRLee, Wei Lin; Imakaev, Maxim; Armas, Federica; McElroy, Kyle A.; Gu, Xiaoqiong; Duvallet, Claire; Chandra, Franciscus; Chen, Hongjie; Leifels, Mats; Mendola, Samuel; Floyd-O'Sullivan, Róisín; Powell, Morgan M.; Wilson, Shane T.; Berge, Karl L. J.; Lim, Claire Y. J.; Wu, Fuqing; Xiao, Amy; Moniz, Katya; Ghaeli, Newsha; Matus, Mariana; Thompson, Janelle R.; Alm, Eric J.
10 2021Persistence of dengue (serotypes 2 and 3), Zika, yellow fever, and murine hepatitis virus RNA in untreated wastewaterChandra, Franciscus; Lee, Wei Lin; Armas, Federica; Leifels, Mats; Gu, Xiaoqiong; Chen, Hongjie; Wuertz, Stefan; Alm, Eric J.; Thompson, Janelle
11 2022Monitoring human arboviral diseases through wastewater surveillance: challenges, progress and future opportunitiesLee, Wei Lin; Gu, Xiaoqiong; Armas, Federica; Leifels, Mats; Wu, Fuqing; Chandra, Franciscus; Chua, Desmond Feng Jun; Syenina, Ayesa; Chen, Hongjie; Cheng, Dan; Ooi, Eng Eong; Wuertz, Stefan; Alm, Eric J.; Thompson, Janelle
122022RNA viruses in aquatic ecosystems through the lens of ecological genomics and transcriptomicsKolundžija, Sandra; Cheng, Dong-Qiang; Lauro, Federico M.
132022Development of an efficient wastewater testing protocol for high-throughput country-wide SARS-CoV-2 monitoringMailepessov, Diyar; Arivalan, Sathish; Kong, Marcella; Griffiths, Jane; Low, Swee Ling; Chen, Hongjie; Hapuarachchi, Hapuarachchige Chanditha; Gu, Xiaoqiong; Lee, Wei Lin; Alm, Eric J.; Thompson, Janelle; Wuertz, Stefan; Gin, Karina; Ng, Lee Ching; Wong, Judith Chui Ching
142022Rapid displacement of SARS-CoV-2 variant Delta by Omicron revealed by allele-specific PCR in wastewaterLee, Wei Lin; Armas, Federica; Guarneri, Flavia; Gu, Xiaoqiong; Formenti, Nicoletta; Wu, Fuqing; Chandra, Franciscus; Parisio, Giovanni; Chen, Hongjie; Xiao, Amy; Romeo, Claudia; Scali, Federico; Tonni, Matteo; Leifels, Mats; Chua, Desmond Feng Jun; Kwok, Germaine W. C.; Tay, Joey Y. R.; Pasquali, Paolo; Thompson, Janelle; Alborali, Giovanni Loris; Alm, Eric J.
152019Citizen-science for the future : advisory case studies from around the globeSimoniello, Christina; Jencks, Jennifer; Lauro, Federico M.; Loftis, Jon Derek; Weslawski, Jan Marcin; Deja, Kajetan; Forrest, David R.; Gossett, Sarah; Jeffries, Thomas C.; Jensen, Rachelle M.; Kobara, Shinichi; Nolan, Lindsey; Ostrowski, Martin; Pounds, Dana; Roseman, Gabriel; Basco, Olivia; Gosselin, Serge; Reed, Adam; Wills, Peter; Wyatt, David
16 2020Making waves : wastewater surveillance of SARS-CoV-2 for population-based health managementThompson, Janelle R. ; Nancharaiah, Yarlagadda V.; Gu, Xiaoqiong; Lee, Wei Lin; Rajal, Verónica Beatriz; Haines, Monamie Bhadra; Girones, Rosina; Ng, Lee Ching; Alm, Eric J.; Wuertz, Stefan
172023Population-specific positive selection on low CR1 expression in malaria-endemic regionsLorenzini, Paolo Alberto; Gusareva, Elena S.; Ghosh, Amit Gourav; Nurul Adilah Binte Ramli; Preiser, Peter Rainer; Kim, Hie Lim
182022Who's afraid of genetic tests?: an assessment of Singapore's public attitudes and changes in attitudes after taking a genetic testCheung, Ross; Jolly, Shreshtha; Vimal, Manoj; Kim, Hie Lim; McGonigle, Ian
192018Complete genome sequence of Acinetobacter indicus type strain SGAir0564 isolated from tropical air collected in SingaporeVettath, Vineeth Kodengil; Junqueira, Ana Carolina M.; Uchida, Akira; Purbojati, Rikky W.; Houghton, James N. I.; Chénard, Caroline; Drautz-Moses, Daniela I.; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Gaultier, Nicolas E.; Heinle, Cassie E.; Premkrishnan, Balakrishnan N. V.; Schuster, Stephan C.
202023Prehistoric human migration between Sundaland and South Asia was driven by sea-level riseKim, Hie Lim ; Li, Tanghua; Kalsi, Namrata; Nguyen, Hung Tran The; Shaw, Timothy Adam; Ang, Khai C.; Cheng, Keith C.; Ratan, Aakrosh; Peltier, W. Richard; Samanta, Dhrubajyoti; Pratapneni, Mahesh; Schuster, Stephan Christoph; Horton, Benjamin Peter
212023Co-incidence of BA.1 and BA.2 at the start of Singapore's Omicron wave revealed by community and university campus wastewater surveillanceChua, Desmond Feng Jun; Kim, Se Yeon; Hill, Eric; Cai, Jia Wei; Lee, Wei Lin; Gu, Xiaoqiong; Siti Aisyah Afri Affandi; Kwok, Germaine Wee Chiew; Ng, Weijie; Leifels, Mats; Armas, Federica; Chandra, Franciscus; Chen, Hongjie; Alma, Eric J.; Tay, Martin; Wong, Judith Chui Ching; Ng, Lee Ching; Wuertz, Stefan; Thompson, Janelle Renee
222018Genome sequence of Geobacillus thermoleovorans SGAir0734, isolated from Singapore airGaultier, Nicolas Eugene; Junqueira, Ana Carolina Martins; Uchida, Akira; Houghton, James N. I.; Chénard, Caroline; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Kee, Carmon; Premkrishnan, Balakrishnan N. V.; Vettath, Vineeth Kodengil; Drautz-Moses, Daniela I.; Purbojati, Rikky Wenang; Heinle, Cassie Elizabeth; Lim, Serene Boon Yuean; Schuster, Stephan Christoph
23 2022inPhocus: current state and challenges of phage research in SingaporeVerma, Navin Kumar; Tan, Si Jia; Chen, John; Chen, Hanrong; Muhammad Hafiz Ismail; Rice, Scott A.; Bifani, Pablo; Hariharan, , Sukumar; Paul, , Vivek Daniel; Sriram, Bharathi; Dam, Linh Chi; Chan, Chia Ching; Ho, Peiying; Goh, Boon Chong; Chung, Jasmine Shimin; Goh, Kenneth Choon Meng; Thong, Shu Hua; Kwa, Andrea Lay-Hoon; Ostrowski, Adam; Aung, Thet Tun; Halimah Razali; Low, Shermaine W. Y.; Bhattacharyya, Mani Shankar; Gautam, Hemant K.; Lakshminarayanan, Rajamani; Sicheritz-Pontén, Thomas; Clokie, Martha R. J.; Moreira, Wilfried; van Steensel, Maurice Adrianus Monique
242021Population-specific adaptation in malaria-endemic regions of AsiaGusareva, Elena S.; Lorenzini, Paolo Alberto; Nurul Adilah Ramli; Ghosh, Amit Gourav; Kim, Hie Lim
252018Complete genome sequence of Pseudomonas stutzeri type strain SGAir0442, isolated from Singapore air samplesKee, Carmon; Junqueira, Ana Carolina M.; Uchida, Akira; Purbojati, Rikky W.; Houghton, James N. I.; Chénard, Caroline; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Gaultier, Nicolas E.; Premkrishnan, Balakrishnan N. V.; Heinle, Cassie E.; Vettath, Vineeth Kodengil; Drautz-Moses, Daniela I.; Schuster, Stephan C.
262022Vertical stratification of the air microbiome in the lower troposphereDrautz-Moses, Daniela Isabel; Luhung, Irvan; Gusareva, Elena S.; Kee, Carmon; Gaultier, Nicolas Eugene; Premkrishnan, Balakrishnan N. V.; Lee, Choou Fook; Leong, See Ting; Park, Changsook; Yap, Zhei Hwee; Heinle, Cassie Elizabeth; Lau, Kenny Jia Xu; Purbojati, Rikky Wenang; Lim, Serene Boon Yuean; Lim, Yee Hui; Kutmutia, Shruti Ketan; Aung, Ngu War; Oliveira, Elaine Lopes; Ng, Soo Guek; Dacanay, Justine; Ang, Poh Nee; Spence, Samuel D.; Phung, Wen Jia; Wong, Anthony; Kennedy, Ryan J.; Kalsi, Namrata; Sasi, Santhi Puramadathil; Chandrasekaran, Lakshmi; Uchida, Akira; Junqueira, Ana Carolina M.; Kim, Hie Lim; Hankers, Rudolf; Feuerle, Thomas; Corsmeier, Ulrich; Schuster, Stephan Christoph
272018Complete genome sequence of Staphylococcus haemolyticus type strain SGAir0252Premkrishnan, Balakrishnan N. V.; Junqueira, Ana Carolina M.; Uchida, Akira; Purbojati, Rikky W.; Houghton, James N. I.; Chénard, Caroline; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Gaultier, Nicolas E.; Heinle, Cassie E.; Vettath, Vineeth Kodengil; Drautz-Moses, Daniela I.; Schuster, Stephan C.
282017Complete genome sequence of bacillus altitudinis type strain SGAir0031 isolated from tropical air collected in SingaporeVettath, Vineeth Kodengil; Junqueira, Ana Carolina Martins; Uchida, Akira; Purbojati, Rikky Wenang; Houghton, James Nicholas Ian; Chénard, Caroline; Drautz-Moses, Daniela I.; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Lau, Kenny Jia Xu; Gaultier, Nicolas Eugene; Heinle, Cassie Elizabeth; Premkrishnan, Balakrishnan Nair Vasantha; Gusareva, Elena S.; Acerbi, Enzo; Yang, Liang; Schuster, Stephan Christoph
292018Complete genome sequence of Lelliottia nimipressuralis type strain SGAir0187, isolated from tropical air collected in SingaporeHeinle, Cassie E.; Junqueira, Ana Carolina M.; Uchida, Akira; Purbojati, Rikky W.; Houghton, James N. I.; Chénard, Caroline; Drautz-Moses, Daniela I.; Wong, Anthony; Kolundžija, Sandra; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Gaultier, Nicolas E.; Premkrishnan, Balakrishnan N. V.; Vettath, Vineeth Kodengil; Schuster, Stephan C.
302018Complete genome sequence of Acinetobacter schindleri SGAir0122 isolated from Singapore airKee, Carmon; Junqueira, Ana Carolina M.; Uchida, Akira; Purbojati, Rikky W.; Houghton, James N. I.; Chénard, Caroline; Wong, Anthony; Clare, Megan E.; Kushwaha, Kavita K.; Panicker, Deepa; Putra, Alexander; Gaultier, Nicolas E.; Premkrishnan, Balakrishnan N. V.; Heinle, Cassie E.; Vettath, Vineeth Kodengil; Drautz-Moses, Daniela I.; Schuster, Stephan C.
312018Draft genome sequence of Enterobacter sp. strain EA-1, an electrochemically active microorganism isolated from tropical sedimentRice, Scott A.; Marsili, Enrico; Lauro, Federico M.; Doyle, Lucinda Elizabeth; Williams, Rohan Benjamin Hugh
322023Structure vs. chemistry: alternate mechanisms for controlling leaf microbiomesLau, Kenny J. X.; Gusareva, Elena S.; Luhung, Irvan; Premkrishnan, Balakrishnan N. V.; Wong, Anthony; Poh, Tuang Yeow; Uchida, Akira; Oliveira, Elaine L.; Drautz-Moses, Daniela I.; Junqueira, Ana Carolina M.; Schuster, Stephan Christoph
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